Test Opener

Editor Context The context is sent to panogram and then returned with saved diagram data.

Ontology Server The ontology server used to lookup disorders and phenotypes

Mode Code system to use for disorders and phenotypes. The test example uses HPO, clear the input before changing to SCT

Data { "resourceType" : "Composition", "status" : "preliminary", "type" : { "coding" : { "system" : "http://loinc.org", "code" : "11488-4", "display" : "Consult note" } }, "subject" : { "type" : "Patient", "reference" : "#pat" }, "date" : "2019-08-28T12:13:15-10:00", "title" : "Pedigree Details", "extension" : [ { "url" : "https://github.com/aehrc/panogram/panogram-data-extension", "valueAttachment" : { "contentType" : "application/json", "data" : "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" } } ], "section" : [ { "title" : "Patient Condition", "entry" : [ { "type" : "Condition", "reference" : "#cond_0" }, { "type" : "Condition", "reference" : "#cond_1" }, { "type" : "Observation", "reference" : "#fmh_clinical_0_0" }, { "type" : "Observation", "reference" : "#fmh_clinical_0_1" }, { "type" : "Observation", "reference" : "#fmh_genes_0_0" } ] }, { "title" : "Family History", "code" : { "coding" : { "system" : "http://loinc.org", "code" : "10157-6", "display" : "History of family member diseases" } }, "entry" : [ { "type" : "FamilyMemberHistory", "reference" : "#FMH_0" }, { "type" : "FamilyMemberHistory", "reference" : "#FMH_1" }, { "type" : "FamilyMemberHistory", "reference" : "#FMH_2" }, { "type" : "FamilyMemberHistory", "reference" : "#FMH_3" }, { "type" : "FamilyMemberHistory", "reference" : "#FMH_4" }, { "type" : "FamilyMemberHistory", "reference" : "#FMH_5" }, { "type" : "FamilyMemberHistory", "reference" : "#FMH_6" }, { "type" : "FamilyMemberHistory", "reference" : "#FMH_7" }, { "type" : "FamilyMemberHistory", "reference" : "#FMH_8" }, { "type" : "FamilyMemberHistory", "reference" : "#FMH_9" }, { "type" : "FamilyMemberHistory", "reference" : "#FMH_10" }, { "type" : "FamilyMemberHistory", "reference" : "#FMH_11" }, { "type" : "FamilyMemberHistory", "reference" : "#FMH_12" }, { "type" : "FamilyMemberHistory", "reference" : "#FMH_13" }, { "type" : "FamilyMemberHistory", "reference" : "#FMH_14" }, { "type" : "FamilyMemberHistory", "reference" : "#FMH_15" }, { "type" : "FamilyMemberHistory", "reference" : "#FMH_16" }, { "type" : "FamilyMemberHistory", "reference" : "#FMH_17" }, { "type" : "FamilyMemberHistory", "reference" : "#FMH_18" }, { "type" : "FamilyMemberHistory", "reference" : "#FMH_19" }, { "type" : "Observation", "reference" : "#fmh_clinical_19_0" }, { "type" : "Observation", "reference" : "#fmh_genes_19_0" }, { "type" : "FamilyMemberHistory", "reference" : "#FMH_20" }, { "type" : "FamilyMemberHistory", "reference" : "#FMH_21" }, { "type" : "FamilyMemberHistory", "reference" : "#FMH_22" }, { "type" : "FamilyMemberHistory", "reference" : "#FMH_23" } ] } ], "contained" : [ { "id" : "pat", "resourceType" : "Patient", "gender" : "female", "birthDate" : "1970-2-10" }, { "resourceType" : "Condition", "id" : "cond_0", "subject" : { "type" : "Patient", "reference" : "#pat" }, "code" : { "coding" : [ { "system" : "http://www.omim.org", "code" : "234700", "display" : "HEART BLOCK, CONGENITAL" } ] } }, { "resourceType" : "Condition", "id" : "cond_1", "subject" : { "type" : "Patient", "reference" : "#pat" }, "code" : { "coding" : [ { "system" : "http://www.omim.org", "code" : "234750", "display" : "HEART, MALFORMATION OF" } ] } }, { "resourceType" : "FamilyMemberHistory", "id" : "FMH_0", "status" : "completed", "patient" : { "type" : "Patient", "reference" : "#pat" }, "name" : "Smith, Jane (Cooper)", "sex" : { "coding" : [ { "system" : "http://hl7.org/fhir/administrative-gender", "code" : "female", "display" : "Female" } ] }, "relationship" : { "coding" : [ { "system" : "http://terminology.hl7.org/CodeSystem/v3-RoleCode", "code" : "ONESELF", "display" : "self" } ] }, "extension" : [ { "url" : "http://hl7.org/fhir/StructureDefinition/family-member-history-genetics-parent", "extension" : [ { "url" : "type", "valueCodeableConcept" : { "coding" : [ { "system" : "http://terminology.hl7.org/CodeSystem/v3-RoleCode", "code" : "NPRN", "display" : "natural parent" } ] } }, { "url" : "reference", "valueReference" : { "reference" : "#FMH_1" } } ] }, { "url" : "http://hl7.org/fhir/StructureDefinition/family-member-history-genetics-parent", "extension" : [ { "url" : "type", "valueCodeableConcept" : { "coding" : [ { "system" : "http://terminology.hl7.org/CodeSystem/v3-RoleCode", "code" : "NPRN", "display" : "natural parent" } ] } }, { "url" : "reference", "valueReference" : { "reference" : "#FMH_2" } } ] }, { "url" : "http://hl7.org/fhir/StructureDefinition/family-member-history-genetics-observation", "valueReference" : { "type" : "Observation", "reference" : "#fmh_clinical_0_0" } }, { "url" : "http://hl7.org/fhir/StructureDefinition/family-member-history-genetics-observation", "valueReference" : { "type" : "Observation", "reference" : "#fmh_clinical_0_1" } }, { "url" : "http://hl7.org/fhir/StructureDefinition/family-member-history-genetics-observation", "valueReference" : { "type" : "Observation", "reference" : "#fmh_genes_0_0" } } ], "bornDate" : "1970-2-10", "note" : [ { "text" : "ONESELF\nTEST" } ], "condition" : [ { "code" : { "coding" : [ { "system" : "http://www.omim.org", "code" : "234700", "display" : "HEART BLOCK, CONGENITAL" } ] } }, { "code" : { "coding" : [ { "system" : "http://www.omim.org", "code" : "234750", "display" : "HEART, MALFORMATION OF" } ] } } ] }, { "resourceType" : "Observation", "id" : "fmh_clinical_0_0", "status" : "preliminary", "valueString" : "HP:0012168", "subject" : { "type" : "Patient", "reference" : "#pat" } }, { "resourceType" : "Observation", "id" : "fmh_clinical_0_1", "status" : "preliminary", "valueString" : "http://purl.obolibrary.org/obo/PR_000001352", "subject" : { "type" : "Patient", "reference" : "#pat" } }, { "resourceType" : "Observation", "id" : "fmh_genes_0_0", "status" : "preliminary", "valueString" : "HGNC:185", "subject" : { "type" : "Patient", "reference" : "#pat" } }, { "resourceType" : "FamilyMemberHistory", "id" : "FMH_1", "status" : "completed", "patient" : { "type" : "Patient", "reference" : "#pat" }, "name" : "Cooper, Mary (Jordan)", "sex" : { "coding" : [ { "system" : "http://hl7.org/fhir/administrative-gender", "code" : "female", "display" : "Female" } ] }, "relationship" : { "coding" : [ { "system" : "http://terminology.hl7.org/CodeSystem/v3-RoleCode", "code" : "NPRN", "display" : "natural parent" } ] }, "extension" : [ { "url" : "http://hl7.org/fhir/StructureDefinition/family-member-history-genetics-parent", "extension" : [ { "url" : "type", "valueCodeableConcept" : { "coding" : [ { "system" : "http://terminology.hl7.org/CodeSystem/v3-RoleCode", "code" : "NMTH", "display" : "natural mother" } ] } }, { "url" : "reference", "valueReference" : { "reference" : "#FMH_17" } } ] }, { "url" : "http://hl7.org/fhir/StructureDefinition/family-member-history-genetics-parent", "extension" : [ { "url" : "type", "valueCodeableConcept" : { "coding" : [ { "system" : "http://terminology.hl7.org/CodeSystem/v3-RoleCode", "code" : "NFTH", "display" : "natural father" } ] } }, { "url" : "reference", "valueReference" : { "reference" : "#FMH_18" } } ] } ], "bornDate" : "1951-8-6", "note" : [ { "text" : "NMTH" } ] }, { "resourceType" : "FamilyMemberHistory", "id" : "FMH_2", "status" : "completed", "patient" : { "type" : "Patient", "reference" : "#pat" }, "name" : "Cooper, Roger", "sex" : { "coding" : [ { "system" : "http://hl7.org/fhir/administrative-gender", "code" : "male", "display" : "Male" } ] }, "relationship" : { "coding" : [ { "system" : "http://terminology.hl7.org/CodeSystem/v3-RoleCode", "code" : "NPRN", "display" : "natural parent" } ] }, "bornDate" : "1949-3-8", "note" : [ { "text" : "NFTH" } ] }, { "resourceType" : "FamilyMemberHistory", "id" : "FMH_3", "status" : "completed", "patient" : { "type" : "Patient", "reference" : "#pat" }, "name" : "Smith, Tarzan", "sex" : { "coding" : [ { "system" : "http://hl7.org/fhir/administrative-gender", "code" : "male", "display" : "Male" } ] }, "relationship" : { "coding" : [ { "system" : "http://terminology.hl7.org/CodeSystem/v3-RoleCode", "code" : "SIGOTHR", "display" : "significant other" } ] }, "bornDate" : "1967-8-15", "note" : [ { "text" : "SIGOTHR" } ] }, { "resourceType" : "FamilyMemberHistory", "id" : "FMH_4", "status" : "completed", "patient" : { "type" : "Patient", "reference" : "#pat" }, "name" : "Smith, Bob", "sex" : { "coding" : [ { "system" : "http://hl7.org/fhir/administrative-gender", "code" : "male", "display" : "Male" } ] }, "relationship" : { "coding" : [ { "system" : "http://terminology.hl7.org/CodeSystem/v3-RoleCode", "code" : "SON", "display" : "natural son" } ] }, "extension" : [ { "url" : "http://hl7.org/fhir/StructureDefinition/family-member-history-genetics-parent", "extension" : [ { "url" : "type", "valueCodeableConcept" : { "coding" : [ { "system" : "http://terminology.hl7.org/CodeSystem/v3-RoleCode", "code" : "NMTH", "display" : "natural mother" } ] } }, { "url" : "reference", "valueReference" : { "reference" : "#FMH_0" } } ] }, { "url" : "http://hl7.org/fhir/StructureDefinition/family-member-history-genetics-parent", "extension" : [ { "url" : "type", "valueCodeableConcept" : { "coding" : [ { "system" : "http://terminology.hl7.org/CodeSystem/v3-RoleCode", "code" : "NFTH", "display" : "natural father" } ] } }, { "url" : "reference", "valueReference" : { "reference" : "#FMH_3" } } ] } ], "bornDate" : "1990-8-1", "note" : [ { "text" : "SON" } ] }, { "resourceType" : "FamilyMemberHistory", "id" : "FMH_5", "status" : "completed", "patient" : { "type" : "Patient", "reference" : "#pat" }, "name" : "Smith, Anne (Limet)", "sex" : { "coding" : [ { "system" : "http://hl7.org/fhir/administrative-gender", "code" : "female", "display" : "Female" } ] }, "relationship" : { "coding" : [ { "system" : "http://terminology.hl7.org/CodeSystem/v3-RoleCode", "code" : "DAUINLAW", "display" : "daughter in-law" } ] }, "bornDate" : "1992-4-14", "note" : [ { "text" : "DAUINLAW" } ] }, { "resourceType" : "FamilyMemberHistory", "id" : "FMH_6", "status" : "completed", "patient" : { "type" : "Patient", "reference" : "#pat" }, "name" : "Smith, Jerry", "sex" : { "coding" : [ { "system" : "http://hl7.org/fhir/administrative-gender", "code" : "male", "display" : "Male" } ] }, "relationship" : { "coding" : [ { "system" : "http://terminology.hl7.org/CodeSystem/v3-RoleCode", "code" : "GRNDSON", "display" : "grandson" } ] }, "extension" : [ { "url" : "http://hl7.org/fhir/StructureDefinition/family-member-history-genetics-parent", "extension" : [ { "url" : 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