Genomics Clinical Picture Repository Implementation Guide
0.1.0 - ci-build

Genomics Clinical Picture Repository Implementation Guide - Local Development build (v0.1.0). See the Directory of published versions

Resource Profile: GencliprResearchStudy - Mappings

Active as of 2022-03-21

Mappings for the GencliprResearchStudy resource profile.

Mappings for BRIDG 5.1 Mapping (https://bridgmodel.nci.nih.gov)

GencliprResearchStudy
ResearchStudyObservationalStudyProtocolVersion; Study; StudyProtocolVersion
   identifierNo BRIDG mapping (although there is DocumentVersion.identifier > StudyProtocolDocumentVersion, this is arguably a different semantic)
   titleNo BRIDG mapping (although there is StudyProtocolDocumentVersionPublicTitle this is arguably a different semantic: title of a document vs title of a research study)
   protocolStudyProtocolDocumentVersionPublicTitle.name
   partOfCompanionStudyRelationship
   statusStudyOverallStatus.code
   primaryPurposeTypeStudyProtocolVersion.primaryPurposeTypeCode
   phaseStudyProtocolVersion.phaseCode
   categoryInterventionalStudyProtocolVersion; InterventionalStudyProtocol.allocationCode; InterventionalStudyProtocol.blindedRoleCode; InterventionalStudyProtocol.blindingSchemaCode; InterventionalStudyProtocol.controlTypeCode
   focusInterventionalStudyProtocol.interventionTypeCode
   conditionStudyCondition.code
   contactPointOfContact > Project > Research Project > Study > StudyProtocol > StudyProtocolVersion
   relatedArtifactStudyProtocolDocument, StudyProtocolDocumentVersion
   keywordDocumentVersion.keywordCode; DocumentVersion.keywordText
   locationStudyProtocolVersion.participatingLocationCode
   descriptionStudyProtocolDocumentVersion.publicDescription
   enrollmentInterventionalStudyProtocol.interventionGroupQuantity
   periodProjectConduct.dateRange; StudyProtocolVersion.plannedDuration
   sponsorRegulatoryApplicationSponsor; StudyLegalSponsor; StudyProtocolVersion.responsiblePartyCode
   principalInvestigatorStudyInvestigator
   sitePlannedStudySite; StudySite
   reasonStoppedStudyOverallStatus.studyStoppedReasonCode
   noteNo BRIDG mapping
   armArm
      nameArm.name
      typeArm.typeCode
      descriptionArm.description
   objectiveStudyObjective
      nameNo BRIDG mapping (BRIDG has a description, but not a name)
      typeStudyObjective.typeCode

Mappings for HL7 v2 Mapping (http://hl7.org/v2)

GencliprResearchStudy
ResearchStudyOBX
   identifier
      useN/A
      typeCX.5
      systemCX.4 / EI-2-4
      valueCX.1 / EI.1
      periodCX.7 + CX.8
      assignerCX.4 / (CX.4,CX.9,CX.10)

Mappings for RIM Mapping (http://hl7.org/v3)

GencliprResearchStudy
ResearchStudyEntity. Role, or Act, Observation[classCode=CLNTRL, moodCode=EVN]
   textAct.text?
   containedN/A
   extensionN/A
   modifierExtensionN/A
   identifier.identifier
      idn/a
      extensionn/a
      useRole.code or implied by context
      typeRole.code or implied by context
      systemII.root or Role.id.root
      valueII.extension or II.root if system indicates OID or GUID (Or Role.id.extension or root)
      periodRole.effectiveTime or implied by context
      assignerII.assigningAuthorityName but note that this is an improper use by the definition of the field. Also Role.scoper
   protocol.outboundRelationship[typeCode=DEFN].target
   partOf.inboundRelationship[typeCode=COMP].source[moodCode=EVN]
   status.status
   enrollment.participation[typeCode=SBJ].role
   period.effectiveTime
   sponsor.participation[typeCode=PRF].role[scoper.determinerCode=INSTANCE]
   note.inboundRelationship(typeCode=SUBJ].source[classCode=ANNGEN, moodCode=EVN].value[xsi:type=ST]
   arm
      idn/a
      extensionn/a
      modifierExtensionN/A
   objective
      idn/a
      extensionn/a
      modifierExtensionN/A

Mappings for ClinicalTrials.gov Mapping (http://clinicaltrials.gov)

GencliprResearchStudy
ResearchStudy
   identifierOrganization's Unique Protocol ID; Secondary IDs
   titleBrief Title
   protocolInterventions; Arm/Intervention Cross-Reference
   phaseStudy Phase
   categoryStudy Type; Primary Purpose; Interventional Model; Masking; Allocation; study Classification; Observational Study Model; Time Perspective; Biospecimen Retention
   focusFocus of Study
   conditionConditions
   contactCentral Contact; Central Contact Backup; Overall Study Officials; Facility Contact & Backup (if Study tied to only one location); Investigators
   relatedArtifactCitations, Links, Available Study Data/Documents
   keywordKeywords
   descriptionDetailed Description
   enrollmentEnrollment; Number of Groups/Cohorts (= number of "enrollment" instances); Groups (Group/Cohort Label = Group.name; Group/Cohort Description = Group.description); Eligibility (Group criteria)
   periodStudy Start Date (start); Study Completion Date (end)
   sponsorSponsor
   principalInvestigatorPrincipal Investigator
   siteFacility
   reasonStoppedWhy Study Stopped
   armArms
      nameArm Label
      typeArm Type
      descriptionArm Description

Mappings for FiveWs Pattern Mapping (http://hl7.org/fhir/fivews)

GencliprResearchStudy
ResearchStudy
   identifierFiveWs.identifier
   statusFiveWs.status
   focusFiveWs.what[x]
   conditionFiveWs.what[x]
   enrollmentFiveWs.subject[x], FiveWs.subject
   periodFiveWs.done[x]
   sponsorFiveWs.actor
   principalInvestigatorFiveWs.actor
   siteFiveWs.where[x]
   reasonStoppedFiveWs.why[x]