Genomics Clinical Picture Repository Implementation Guide - Local Development build (v0.1.0). See the Directory of published versions

• Narrative Content
• XML
• JSON
• TTL

: Genomic Test Type - TTL Representation

Active as of 2022-03-21

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@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

 a fhir:CodeSystem;
  fhir:nodeRole fhir:treeRoot;
  fhir:Resource.id [ fhir:value "GenomicTestType"];
  fhir:DomainResource.text [
     fhir:Narrative.status [ fhir:value "generated" ];
     fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p>This code system http://aehrc.github.io/genclipr-fhir-ig/CodeSystem/GenomicTestType defines the following codes:</p><table class=\"codes\"><tr><td style=\"white-space:nowrap\"><b>Code</b></td><td><b>Display</b></td><td><b>Definition</b></td></tr><tr><td style=\"white-space:nowrap\">TEST:001<a name=\"GenomicTestType-TEST.58001\"> </a></td><td>Gene Panel</td><td>Panel tests look for variants in more than one gene.</td></tr><tr><td style=\"white-space:nowrap\">TEST:002<a name=\"GenomicTestType-TEST.58002\"> </a></td><td>Research Exome</td><td>A whole exome sequencing test done in a research context.</td></tr><tr><td style=\"white-space:nowrap\">TEST:003<a name=\"GenomicTestType-TEST.58003\"> </a></td><td>Research Genome</td><td>A whole genome sequencing test done in a research context.</td></tr><tr><td style=\"white-space:nowrap\">TEST:004<a name=\"GenomicTestType-TEST.58004\"> </a></td><td>Research RNA-seq</td><td>An RNA sequencing test done in a research context.</td></tr></table></div>"
  ];
  fhir:CodeSystem.url [ fhir:value "http://aehrc.github.io/genclipr-fhir-ig/CodeSystem/GenomicTestType"];
  fhir:CodeSystem.version [ fhir:value "0.1.0"];
  fhir:CodeSystem.name [ fhir:value "GenomicTestType"];
  fhir:CodeSystem.title [ fhir:value "Genomic Test Type"];
  fhir:CodeSystem.status [ fhir:value "active"];
  fhir:CodeSystem.date [ fhir:value "2022-03-21T00:46:36+00:00"^^xsd:dateTime];
  fhir:CodeSystem.publisher [ fhir:value "The Australian e-Health Research Centre"];
  fhir:CodeSystem.contact [
     fhir:index 0;
     fhir:ContactDetail.name [ fhir:value "The Australian e-Health Research Centre" ];
     fhir:ContactDetail.telecom [
       fhir:index 0;
       fhir:ContactPoint.system [ fhir:value "url" ];
       fhir:ContactPoint.value [ fhir:value "https://aehrc.com" ]     ], [
       fhir:index 1;
       fhir:ContactPoint.system [ fhir:value "email" ];
       fhir:ContactPoint.value [ fhir:value "ontoserver-support@csiro.au" ]     ]
  ];
  fhir:CodeSystem.description [ fhir:value "Types of genomic tests not available in LOINC."];
  fhir:CodeSystem.copyright [ fhir:value "[Australian Genomics](https://www.australiangenomics.org.au)"];
  fhir:CodeSystem.content [ fhir:value "complete"];
  fhir:CodeSystem.count [ fhir:value "4"^^xsd:nonNegativeInteger];
  fhir:CodeSystem.concept [
     fhir:index 0;
     fhir:CodeSystem.concept.code [ fhir:value "TEST:001" ];
     fhir:CodeSystem.concept.display [ fhir:value "Gene Panel" ];
     fhir:CodeSystem.concept.definition [ fhir:value "Panel tests look for variants in more than one gene." ]
  ], [
     fhir:index 1;
     fhir:CodeSystem.concept.code [ fhir:value "TEST:002" ];
     fhir:CodeSystem.concept.display [ fhir:value "Research Exome" ];
     fhir:CodeSystem.concept.definition [ fhir:value "A whole exome sequencing test done in a research context." ]
  ], [
     fhir:index 2;
     fhir:CodeSystem.concept.code [ fhir:value "TEST:003" ];
     fhir:CodeSystem.concept.display [ fhir:value "Research Genome" ];
     fhir:CodeSystem.concept.definition [ fhir:value "A whole genome sequencing test done in a research context." ]
  ], [
     fhir:index 3;
     fhir:CodeSystem.concept.code [ fhir:value "TEST:004" ];
     fhir:CodeSystem.concept.display [ fhir:value "Research RNA-seq" ];
     fhir:CodeSystem.concept.definition [ fhir:value "An RNA sequencing test done in a research context." ]
  ].

# - ontology header ------------------------------------------------------------

 a owl:Ontology;
  owl:imports fhir:fhir.ttl.